PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G23890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 217aa    MW: 23513 Da    PI: 8.5124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G23890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12250455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   A+++Ik+Lq
  LPERR05G23890.1  2 SHIAVERNRRRQMNEHLKVLRSLTPAF---YIKRGDQASIIGGAIDFIKELQ 50
                     89************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.86E-13154No hitNo description
PROSITE profilePS5088814.996149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRSLTPAFYI KRGDQASIIG GAIDFIKELQ TLLQSLEAQK  60
KRRQQQQSPS PTPSPRSLIT SCSPSAATAS GSSASSSISP KPPAPSQLLV AELAACCNSP  120
LADVEARISG ANVLLRTLSP RRAAPPAVRI IAFLETLHLE VLHLNITTMD DTLLYSFVLS  180
IGLDCHLSVD DLATEVHHTF LLCSNNNPPP TTPPINI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370002e-74AC137000.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0035I01, complete sequence.
GenBankAC1444552e-74AC144455.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0086G17, complete sequence.
GenBankAP0149612e-74AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-74CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638702.11e-104PREDICTED: transcription factor MUTE-like
SwissprotQ9M8K64e-69MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A0D9WKM71e-156A0A0D9WKM7_9ORYZ; Uncharacterized protein
STRINGLOC_Os05g51820.11e-103(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.15e-60bHLH family protein